Naruto gets Banished after bringing Sasuke back then 2 years he becomes Cobra commander with a little help from the former snow and wave country. He then vows vengeance on the civilian council shinobi elders and Danzo including Sasuke and Madara Uchiha. He also wants dominations. Pairing Harem maybe and Minato and Kushina are still alive.

Mary-Anne has a fear that she's too afraid to confront and it gets in the way of her ninja training. Will she face her fear or live with the rest of her life?

Naruto, Hinata, and Kiba are given over to the Joe's For different reasons for training. Eight Years later they return with Snake-Eyes and have been Given Joe ranks as well as been trained by the Joe's. Both Cobra and Ninja's Will be used in Battles.

No one would ever claim a ninja could not adapt. Naruto/Sigma6 Xover. Now complete! Debating remake into a more original form.