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A Time to Heal
by PyroDragon2006 reviews
John thought it was over, but when a new presidential advisor and an old enemy both show up on Atlantis, the wounds run deep. Set after Common Ground, so SPOILERS! Now COMPLETE!
Stargate: Atlantis - Rated: T - English - Drama/Adventure - Chapters: 18 - Words: 53,959 - Reviews: 380 - Favs: 167 - Follows: 128 - Updated: 8/30/2009 - Published: 12/14/2006 - John S., Rodney M. - Complete
Castles in the Sky
by Stealth Dragon reviews
Sheppard is captured and to be a slave to the wraith. It becomes more than a matter of survival, but also a matter of keeping his sanity.
Stargate: Atlantis - Rated: T - English - Hurt/Comfort/Angst - Chapters: 31 - Words: 138,421 - Reviews: 866 - Favs: 190 - Follows: 78 - Updated: 2/8/2008 - Published: 9/27/2007 - John S. - Complete
by Lucilla2 reviews
The sequel to and continuation of my earlier fic ‘Consanguinity’. The Team helps Sheppard get back on his feet after he’s been injured, with a dose of Shep whump when his recovery suffers a setback. Gen Team friendship fic, plus Beckett. Now COMPLETE.
Stargate: Atlantis - Rated: T - English - Friendship/Hurt/Comfort - Chapters: 8 - Words: 26,679 - Reviews: 55 - Favs: 33 - Follows: 33 - Updated: 9/8/2007 - Published: 8/9/2007 - John S. - Complete
Fade to Black
by Daring Duo reviews
The sequel, or continuation, of The White Room in which John and Rodney get into all kinds of trouble working as slaves and battling Kolya.
Stargate: Atlantis - Rated: T - English - Hurt/Comfort - Chapters: 18 - Words: 64,761 - Reviews: 229 - Favs: 57 - Follows: 34 - Updated: 9/7/2007 - Published: 8/2/2007 - Complete
The Price of Freedom
by Astraldust reviews
Captured offworld, John and Rodney are sold into slavery. A Shep centred story with a whump or two. Now complete!
Stargate: Atlantis - Rated: T - English - Friendship - Chapters: 15 - Words: 44,127 - Reviews: 157 - Favs: 41 - Follows: 27 - Updated: 8/6/2007 - Published: 7/10/2007 - John S., Rodney M. - Complete
by T'Pring reviews
Sheppard finds himself in the hands of terrorists who plague a new ally. Alone, and certain that Atlantis has no idea where he is, John must find a way to escape before he loses all sense of what is real...and what is not.
Stargate: Atlantis - Rated: T - English - Suspense/Hurt/Comfort - Chapters: 13 - Words: 25,637 - Reviews: 87 - Favs: 39 - Follows: 22 - Updated: 7/24/2007 - Published: 7/16/2007 - John S., Elizabeth W. - Complete
Under the Mud
by Splitbeak reviews
A visit to a village covered in mud leads to a captured Colonel, and an unexpected alliance with an old enemy. Shep whump. Dark fic.
Stargate: Atlantis - Rated: M - English - Angst/Adventure - Chapters: 23 - Words: 71,790 - Reviews: 199 - Favs: 31 - Follows: 85 - Updated: 4/30/2007 - Published: 5/16/2006 - John S., Rodney M.
by aloola reviews
This is an AU story based on the upcoming season 4 episode Travelers, so there may be spoilers.I'll leave the summary at that as I don't want to include any further spoilers in a story description.
Stargate: Atlantis - Rated: K+ - English - Hurt/Comfort/Angst - Chapters: 9 - Words: 21,445 - Reviews: 66 - Favs: 29 - Follows: 15 - Updated: 3/28/2007 - Published: 3/19/2007 - John S. - Complete
Lost in My World
by Jersey13 reviews
Dr. Carson Beckett is lost in my world, kidnapped by one of the most corrupt organizations in the city of Lae'yere. So I must decide: with whom should my loyalties lie? [Gen, HurtComfort, Carson centered team fic. Extreme Beckett whump. Now complete!]
Stargate: Atlantis - Rated: T - English - Drama/Angst - Chapters: 12 - Words: 25,043 - Reviews: 35 - Favs: 8 - Follows: 9 - Updated: 11/6/2006 - Published: 10/21/2006 - Carson B. - Complete
Fanatics and Thieves
by Astraldust reviews
John has a bad feeling and pays the price when he ignores it. Friendship fic. Shep.whumping.
Stargate: Atlantis - Rated: T - English - Adventure/Sci-Fi - Chapters: 16 - Words: 40,632 - Reviews: 116 - Favs: 25 - Follows: 32 - Updated: 7/23/2006 - Published: 6/17/2006 - John S., Rodney M. - Complete
It's Always Autumn in the Old Trees of Despair
by Kodiak Bear Country reviews
A trade agreement goes wrong. Sheppard is separated from his team, forced to live a life foreign and dangerous, while the rest of the team and Carson Beckett must cope with the events.
Stargate: Atlantis - Rated: M - English - Drama - Chapters: 8 - Words: 67,327 - Reviews: 78 - Favs: 92 - Follows: 12 - Updated: 7/1/2006 - Published: 6/30/2006 - John S. - Complete
by Alipeeps reviews
Request fic for Kodiak Bear Country feat. Sheppy in restraints. Shep whumpage galore. Now complete.
Stargate: Atlantis - Rated: T - English - Hurt/Comfort/Drama - Chapters: 4 - Words: 11,133 - Reviews: 79 - Favs: 81 - Follows: 25 - Updated: 6/27/2006 - Published: 6/23/2006 - John S. - Complete
What's Left Behind
by Daring Duo reviews
In this tag to The Long Goodbye, Thalan hangs around long enough to wear out his welcome with everyone, especially John. The first story coauthored by Merlin71 and Titan5.
Stargate: Atlantis - Rated: T - English - Angst - Chapters: 18 - Words: 70,209 - Reviews: 251 - Favs: 68 - Follows: 39 - Updated: 4/20/2006 - Published: 4/3/2006 - Complete
The Day of Reckoning
by Titan5 reviews
Kolya has a plan to exact restitution from Sheppard for his crimes against the Genii people and the Colonel ends up paying a high price.
Stargate: Atlantis - Rated: T - English - Angst/Drama - Chapters: 20 - Words: 62,357 - Reviews: 465 - Favs: 104 - Follows: 37 - Updated: 1/30/2006 - Published: 12/31/2005 - Complete
by Orion9 reviews
Sheppard gets into a spot of trouble...
Stargate: Atlantis - Rated: K - English - Friendship/Humor - Chapters: 1 - Words: 3,229 - Reviews: 15 - Favs: 12 - Follows: 3 - Published: 11/25/2005 - John S., Rodney M. - Complete
Not The Daddy
by Merlin7 M.N. Talbert reviews
A Trip to a friendly world to explore potential defensive technology turns into something very unexpected for Colonel Sheppard. Spoilers for season two![COMPLETE]
Stargate: Atlantis - Rated: T - English - Drama/Humor - Chapters: 35 - Words: 125,699 - Reviews: 483 - Favs: 106 - Follows: 35 - Updated: 11/17/2005 - Published: 10/21/2005 - John S., Rodney M. - Complete
Taken By Storm
by kidders reviews
Major Sheppard is a prisoner of the Genii, and events do not go nicely for him.
Stargate: Atlantis - Rated: T - English - Angst/Adventure - Chapters: 1 - Words: 7,542 - Reviews: 19 - Favs: 11 - Follows: 6 - Published: 8/22/2005 - John S.
by Kodiak Bear Country reviews
The Hoffans contact Atlantis, wanting to renew their relationship and prove that the vaccine has been perfected, and had the desired effect. The problem is they aren't telling the truth. Set in season two, between Intruder and Runner.[COMPLETE]
Stargate: Atlantis - Rated: T - English - Chapters: 9 - Words: 21,875 - Reviews: 104 - Favs: 22 - Follows: 2 - Updated: 5/6/2005 - Published: 4/26/2005 - Complete
Wait Until Dark
by Susan Zell reviews
COMPLETE: Nightmares and paranoia plague Major Sheppard, and his team must determine why before he sinks so deep that there may be no returning. New Chapters Nine and Ten!
Stargate: Atlantis - Rated: T - English - Drama/Angst - Chapters: 10 - Words: 21,159 - Reviews: 57 - Favs: 36 - Follows: 2 - Updated: 2/24/2005 - Published: 1/22/2005 - Complete